VIRsiRNAdb

../../tmp/servers/virsirnadb/1302662927
Result for your query siRNA sequence

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	Strain name	Start	Alignment	End	% Identity
Query	virsi1484	1	`cagcatgcaaatcgaagac`	19
D90195.1	JEVSAA Japanese encephalitis virus strain SA(A) genomic RNA, complete	2930	`...................`	2948	100
D90195.1	JEVSAA Japanese encephalitis virus strain SA(A) genomic RNA, complete	2478	`.........c..t._____`	2465	63
D90194.1	JEVSAV Japanese encephalitis virus strain SA(V) genomic RNA, complete	2930	`...................`	2948	100
D90194.1	JEVSAV Japanese encephalitis virus strain SA(V) genomic RNA, complete	2478	`.........c..t._____`	2465	63
M55506.1	JEVCMNAA Japanese encephalitis SA-14 virus, complete genome	2930	`...................`	2948	100
M55506.1	JEVCMNAA Japanese encephalitis SA-14 virus, complete genome	2478	`.........c..t._____`	2465	63
U14163.1	JEU14163 Japanese encephalitis virus SA14 polyprotein mRNA, complete c	2930	`...................`	2948	100
U14163.1	JEU14163 Japanese encephalitis virus SA14 polyprotein mRNA, complete c	2478	`.........c..t._____`	2465	63
U15763.1	JEU15763 Japanese encephalitis virus C, prM, M, E, NS1, NS2A, NS2B, NS	2930	`...................`	2948	100
U15763.1	JEU15763 Japanese encephalitis virus C, prM, M, E, NS1, NS2A, NS2B, NS	2478	`.........c..t._____`	2465	63
L48961.1	JEVBEICG Japanese encephalitis virus (strain Beijing-1), complete geno	2930	`...................`	2948	100
L48961.1	JEVBEICG Japanese encephalitis virus (strain Beijing-1), complete geno	2478	`.........c..t._____`	2465	63
U47032.1	JEU47032 Japanese encephalitis virus strain p3, complete genome	2930	`...................`	2948	100
U47032.1	JEU47032 Japanese encephalitis virus strain p3, complete genome	2478	`.........c..t._____`	2465	63
AF014160.1	Japanese encephalitis virus polyprotein gene, complete cds	2930	`...................`	2948	100
AF014160.1	Japanese encephalitis virus polyprotein gene, complete cds	2478	`.........c..t._____`	2465	63
AF014161.1	Japanese encephalitis virus polyprotein gene, complete cds	2930	`...................`	2948	100
AF014161.1	Japanese encephalitis virus polyprotein gene, complete cds	2478	`.........c..t._____`	2465	63
AF075723.1	Japanese encephalitis virus strain GP78, complete genome	2930	`...................`	2948	100
AF075723.1	Japanese encephalitis virus strain GP78, complete genome	2478	`.........c..t._____`	2465	63
AF080251.1	Japanese encephalitis virus isolate Vellore P20778, complete genome	2930	`...................`	2948	100
AF080251.1	Japanese encephalitis virus isolate Vellore P20778, complete genome	2478	`.........c..t._____`	2465	63
AF098735.1	Japanese encephalitis virus strain HVI, complete genome	2930	`...................`	2948	100
AF098735.1	Japanese encephalitis virus strain HVI, complete genome	2478	`.........c..t._____`	2465	63
AF098736.1	Japanese encephalitis virus strain TC, complete genome	2930	`...................`	2948	100
AF098736.1	Japanese encephalitis virus strain TC, complete genome	2478	`.........c..t._____`	2465	63
AF098737.1	Japanese encephalitis virus strain TL, complete genome	2930	`...................`	2948	100
AF098737.1	Japanese encephalitis virus strain TL, complete genome	2478	`.........c..t._____`	2465	63
AF069076.1	Japanese encephalitis virus JaGAr 01 complete genome	2930	`...................`	2948	100
AF069076.1	Japanese encephalitis virus JaGAr 01 complete genome	2478	`.........c..t._____`	2465	63
AF221499.1	Japanese encephalitis virus isolate CH2195LA, complete genome	2930	`...................`	2948	100
AF221499.1	Japanese encephalitis virus isolate CH2195LA, complete genome	2478	`.........c..t._____`	2465	63
AF221500.1	Japanese encephalitis virus isolate CH2195SA, complete genome	2930	`...................`	2948	100
AF221500.1	Japanese encephalitis virus isolate CH2195SA, complete genome	2478	`.........c..t._____`	2465	63
AF217620.1	Japanese encephalitis virus FU strain, complete genome	2930	`...................`	2948	100
AF217620.1	Japanese encephalitis virus FU strain, complete genome	5622	`..t.c.........tg.._`	5605	73
AB051292.1	Japanese encephalitis virus gene for viral protein, complete cds	2931	`...................`	2949	100
AF315119.1	Japanese encephalitis virus strain SA14-14-2, complete genome	2930	`...................`	2948	100
AF315119.1	Japanese encephalitis virus strain SA14-14-2, complete genome	2478	`.........c..t._____`	2465	63
AF416457.1	Japanese encephalitis virus attenuated strain SA14-12-1-7, complete g	2930	`...................`	2948	100
AF416457.1	Japanese encephalitis virus attenuated strain SA14-12-1-7, complete g	2478	`.........c..t._____`	2465	63
L78128.1	JEVLINGCG Japanese encephalitis virus strain Ling, complete genome	2930	`...................`	2948	100
L78128.1	JEVLINGCG Japanese encephalitis virus strain Ling, complete genome	2478	`.........c..t._____`	2465	63
AF486638.1	Japanese encephalitis virus strain YL polyprotein mRNA, complete cds	2930	`...................`	2948	100
AF486638.1	Japanese encephalitis virus strain YL polyprotein mRNA, complete cds	2478	`.........c..t._____`	2465	63
AF254452.1	Japanese encephalitis virus strain CH1392 complete genome	2930	`...................`	2948	100
AF254452.1	Japanese encephalitis virus strain CH1392 complete genome	2478	`.........c..t._____`	2465	63
AF254453.1	Japanese encephalitis virus strain T1P1 complete genome	2930	`...................`	2948	100
AF254453.1	Japanese encephalitis virus strain T1P1 complete genome	2478	`.........c..t._____`	2465	63
AY316157.1	Japanese encephalitis virus strain KV1899, complete genome	2930	`...................`	2948	100
AY303791.1	Japanese encephalitis virus strain T1P1-S1, complete genome	2930	`...................`	2948	100
AY303791.1	Japanese encephalitis virus strain T1P1-S1, complete genome	2478	`.........c..t._____`	2465	63
AY303792.1	Japanese encephalitis virus strain T1P1-L4, complete genome	2930	`...................`	2948	100
AY303792.1	Japanese encephalitis virus strain T1P1-L4, complete genome	2478	`.........c..t._____`	2465	63
AY303793.1	Japanese encephalitis virus strain CJN-S1, complete genome	2930	`...................`	2948	100
AY303794.1	Japanese encephalitis virus strain CJN-L1, complete genome	2930	`...................`	2948	100
AY303795.1	Japanese encephalitis virus strain CC27-L1, complete genome	2930	`...................`	2948	100
AY303796.1	Japanese encephalitis virus strain CC27-L3, complete genome	2930	`...................`	2948	100
AY303797.1	Japanese encephalitis virus strain CC27-S6, complete genome	2930	`...................`	2948	100
AY303798.1	Japanese encephalitis virus strain CC27-S8, complete genome	2930	`...................`	2948	100
AY508812.1	Japanese encephalitis virus strain ML17 (live vaccine)/Japan/1981/hum	2930	`...................`	2948	100
AY508812.1	Japanese encephalitis virus strain ML17 (live vaccine)/Japan/1981/hum	2478	`.........c..t._____`	2465	63
AY508813.1	Japanese encephalitis virus strain JaOH0566/Japan/1966/human, complet	2930	`...................`	2948	100
AY508813.1	Japanese encephalitis virus strain JaOH0566/Japan/1966/human, complet	2478	`.........c..t._____`	2465	63
AY585242.1	Japanese encephalitis virus strain K87P39, complete genome	2930	`...................`	2948	100
AY585242.1	Japanese encephalitis virus strain K87P39, complete genome	2478	`.........c..t._____`	2465	63
AY585242.1	Japanese encephalitis virus strain K87P39, complete genome	3895	`_____.........g..t.`	3908	63
AY585243.1	Japanese encephalitis virus CNU/LP2, complete genome	2930	`...................`	2948	100
AY585243.1	Japanese encephalitis virus CNU/LP2, complete genome	2478	`.........c..t._____`	2465	63
AY585243.1	Japanese encephalitis virus CNU/LP2, complete genome	3895	`_____.........g..t.`	3908	63
AB196923.1	Japanese encephalitis virus genomic RNA, complete genome, clone:JEV-A	2930	`...................`	2948	100
AB196923.1	Japanese encephalitis virus genomic RNA, complete genome, clone:JEV-A	2478	`.........c..t._____`	2465	63
AB196924.1	Japanese encephalitis virus genomic RNA, complete genome, clone:JEV-a	2930	`...................`	2948	100
AB196924.1	Japanese encephalitis virus genomic RNA, complete genome, clone:JEV-a	2478	`.........c..t._____`	2465	63
AB196925.1	Japanese encephalitis virus genomic RNA, complete genome, clone:JEV-r	2930	`...................`	2948	100
AB196925.1	Japanese encephalitis virus genomic RNA, complete genome, clone:JEV-r	2478	`.........c..t._____`	2465	63
AB196926.1	Japanese encephalitis virus genomic RNA, complete genome, clone:JEV-A	2930	`...................`	2948	100
AB196926.1	Japanese encephalitis virus genomic RNA, complete genome, clone:JEV-A	2478	`.........c..t._____`	2465	63
AY849939.1	Japanese encephalitis virus strain HW, complete genome	2930	`...................`	2948	100
AY849939.1	Japanese encephalitis virus strain HW, complete genome	2478	`.........c..t._____`	2465	63
AB241119.1	Japanese encephalitis virus genomic RNA, complete genome, strain: JEV	2931	`...................`	2949	100
EF107523.1	Japanese encephalitis virus strain WHe, complete genome	2930	`...................`	2948	100
EF107523.1	Japanese encephalitis virus strain WHe, complete genome	2478	`.........c..t._____`	2465	63
EF543861.1	Japanese encephalitis virus strain SH0601, complete genome	2930	`...................`	2948	100
EF543861.1	Japanese encephalitis virus strain SH0601, complete genome	2478	`.........c..t._____`	2465	63
EF571853.1	Japanese encephalitis virus strain Nakayama, complete genome	2930	`...................`	2948	100
EF571853.1	Japanese encephalitis virus strain Nakayama, complete genome	2478	`.........c..t._____`	2465	63
EF623987.1	Japanese encephalitis virus isolate 014178, complete genome	2930	`...................`	2948	100
EF623987.1	Japanese encephalitis virus isolate 014178, complete genome	2478	`.........c..t._____`	2465	63
EF623988.1	Japanese encephalitis virus isolate 057434, complete genome	2930	`...................`	2948	100
EF623988.1	Japanese encephalitis virus isolate 057434, complete genome	2478	`.........c..t._____`	2465	63
EF623989.1	Japanese encephalitis virus isolate 04940-4, complete genome	2930	`...................`	2948	100
EF623989.1	Japanese encephalitis virus isolate 04940-4, complete genome	2478	`.........c..t._____`	2465	63
EU429297.1	Japanese encephalitis virus strain SH17M-07, complete genome	2931	`...................`	2949	100
EU693899.1	Japanese encephalitis virus strain XJP613, complete genome	2931	`...................`	2949	100
EU693899.1	Japanese encephalitis virus strain XJP613, complete genome	2479	`.........c..t._____`	2466	63
EU880214.1	Japanese encephalitis virus strain XJ69, complete genome	2931	`...................`	2949	100
EU880214.1	Japanese encephalitis virus strain XJ69, complete genome	2479	`.........c..t._____`	2466	63
GQ199609.1	Japanese encephalitis virus clone CNU/LP2x, complete genome	2930	`...................`	2948	100
GQ199609.1	Japanese encephalitis virus clone CNU/LP2x, complete genome	2478	`.........c..t._____`	2465	63
GQ199609.1	Japanese encephalitis virus clone CNU/LP2x, complete genome	3895	`_____.........g..t.`	3908	63
AB551990.1	Japanese encephalitis virus RNA, complete genome, strain: JaTAn1/75	2930	`...................`	2948	100
AB551990.1	Japanese encephalitis virus RNA, complete genome, strain: JaTAn1/75	2478	`.........c..t._____`	2465	63
AB551991.1	Japanese encephalitis virus RNA, complete genome, strain: JaTAn1/90	2930	`...................`	2948	100
AB551991.1	Japanese encephalitis virus RNA, complete genome, strain: JaTAn1/90	5196	`...g.........t.gc..`	5178	78
AB551991.1	Japanese encephalitis virus RNA, complete genome, strain: JaTAn1/90	2478	`.........c..t._____`	2465	63
AB551992.1	Japanese encephalitis virus RNA, complete genome, strain: JaTAn2/91	2930	`...................`	2948	100
AB551992.1	Japanese encephalitis virus RNA, complete genome, strain: JaTAn2/91	5196	`...g.........t.gc..`	5178	78
AB551992.1	Japanese encephalitis virus RNA, complete genome, strain: JaTAn2/91	2478	`.........c..t._____`	2465	63
GQ918133.2	Japanese encephalitis virus strain NJ 2008, complete genome	2930	`...................`	2948	100
GQ918133.2	Japanese encephalitis virus strain NJ 2008, complete genome	2478	`.........c..t._____`	2465	63
HM228921.1	Japanese encephalitis virus strain 90VN70, complete genome	2931	`...................`	2949	100
GQ902058.1	Japanese encephalitis virus strain B-0860/82, complete genome	2931	`...................`	2949	100
GQ902058.1	Japanese encephalitis virus strain B-0860/82, complete genome	2479	`.........c..t._____`	2466	63
GQ902059.1	Japanese encephalitis virus strain 1070/82 (Subin), complete genome	2931	`...................`	2949	100
GQ902059.1	Japanese encephalitis virus strain 1070/82 (Subin), complete genome	2479	`.........c..t._____`	2466	63
GQ902060.1	Japanese encephalitis virus strain 3KP''U''CV569, complete genome	2931	`...................`	2949	100
GQ902060.1	Japanese encephalitis virus strain 3KP''U''CV569, complete genome	2479	`.........c..t._____`	2466	63
GQ902061.1	Japanese encephalitis virus strain B-1381-85, complete genome	2931	`...................`	2949	100
GQ902061.1	Japanese encephalitis virus strain B-1381-85, complete genome	2479	`.........c..t._____`	2466	63
GQ902062.1	Japanese encephalitis virus strain 4790-85, complete genome	2931	`...................`	2949	100
HQ893545.1	Japanese encephalitis virus isolate SX09S-01, complete genome	2931	`...................`	2949	100
AB594829.1	Japanese encephalitis virus genomic RNA, complete genome, strain: JEV	2931	`...................`	2949	100
M18370.1	JEVCG Japanese encephalitis virus (strain JaOArS982), complete genome	2930	`...................`	2948	100
M18370.1	JEVCG Japanese encephalitis virus (strain JaOArS982), complete genome	2478	`.........c..t._____`	2465	63
AF045551.2	Japanese encephalitis virus strain K94P05, complete genome	2930	`.................._`	2947	94
AB241118.1	Japanese encephalitis virus genomic RNA, complete genome, strain: JEV	2931	`.................._`	2948	94
FJ495189.1	Japanese encephalitis virus isolate HEN0701, complete genome	2931	`.................._`	2948	94
GU187972.1	Japanese encephalitis virus strain SC04-17, complete genome	2931	`.................._`	2948	94
GU205163.1	Japanese encephalitis virus strain 131V, complete genome	2931	`.................._`	2948	94
GQ902063.1	Japanese encephalitis virus strain KPP82-39-214CT, complete genome	2931	`.................._`	2948	94
GQ902063.1	Japanese encephalitis virus strain KPP82-39-214CT, complete genome	2479	`.........c..t._____`	2466	63
HM366552.1	Japanese encephalitis virus isolate GZ56, complete genome	2931	`.................._`	2948	94
GU556217.1	Japanese encephalitis virus strain JX61, complete genome	2931	`.....c.............`	2949	94
GU556217.1	Japanese encephalitis virus strain JX61, complete genome	2479	`.........c..t._____`	2466	63
HM596272.1	Japanese encephalitis virus strain Muar, complete genome	2930	`.........g..t......`	2948	89

VIRsiRNAdb

Database of Viral siRNA / shRNA